Welcome to the Genome Toolbox! I am glad you navigated to the blog and hope you find the contents useful and insightful for your genomic needs. If you find any of the entries particularly helpful, be sure to click the +1 button on the bottom of the post and share with your colleagues. Your input is encouraged, so if you have comments or are aware of more efficient tools not included in a post, I would love to hear from you. Enjoy your time browsing through the Toolbox.
Showing posts with label for. Show all posts
Showing posts with label for. Show all posts

Tuesday, November 4, 2014

R Syntax for a Simple For Loop

For loops in R are useful tidbits of code to keep track of a counter, iterate through a variable, or do a complex operation on a subset of variables.  Below is an example R script showing the code and syntax needed to do some simple tasks with R for loops.

Monday, August 25, 2014

Python List Comprehension

Python list comprehension enables for easy manipulation of a list variable.  For example, list comprehension can be used to convert from a string to an integer or float as well as do some common operation on a list.  Below is an example script that shows the syntax for list comprehension and how to utilize the code in Python.  Hope its helpful.

Monday, June 9, 2014

UNIX For Loop through Files in Directory

Sometimes I want to do a particular task to each file in a directory using a UNIX shell script, but for some reason I can never remember the correct syntax to do so.  Here is a quick example bash script to loop through all files of a particular extension in a directory and do an action with the filenames.


The above example loops through all .tar.gz files in the directory and extracts any text file within those files.