It is often handy to be able to feed an argument from the UNIX command line to a Python script. This is very simple to do with the sys package installed. Below is an example of feeding three arguments (chr, start, end) from the command line into Python to be used as variables in a script.
In the script.py file:
At the command line:
A repository of programs, scripts, and tips essential to
genetic epidemiology, statistical genetics, and bioinformatics
Welcome to the Genome Toolbox! I am glad you navigated to the blog and hope you find the contents useful and insightful for your genomic needs. If you find any of the entries particularly helpful, be sure to click the +1 button on the bottom of the post and share with your colleagues. Your input is encouraged, so if you have comments or are aware of more efficient tools not included in a post, I would love to hear from you. Enjoy your time browsing through the Toolbox.
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