Tabix is an incredibly useful tool that indexes large .vcf files and makes it very efficient to find a particular genomic region in the file. It is particularly useful for downloading small portions of files from publicly available ftp data repositories. Here is a brief tutorial on how to install Tabix on a UNIX operating system.
(1) Go here to download the newest release.
(2) Extract the file:
(3) Compile the program by typing make on the UNIX command line.
(4) Export the path by adding the following line to your .bashrc file, saving your .bashrc file, and typing source on the UNIX command line. Note: path_to_tabix is the directory where tabix is installed.
A repository of programs, scripts, and tips essential to
genetic epidemiology, statistical genetics, and bioinformatics
Welcome to the Genome Toolbox! I am glad you navigated to the blog and hope you find the contents useful and insightful for your genomic needs. If you find any of the entries particularly helpful, be sure to click the +1 button on the bottom of the post and share with your colleagues. Your input is encouraged, so if you have comments or are aware of more efficient tools not included in a post, I would love to hear from you. Enjoy your time browsing through the Toolbox.
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