Welcome to the Genome Toolbox! I am glad you navigated to the blog and hope you find the contents useful and insightful for your genomic needs. If you find any of the entries particularly helpful, be sure to click the +1 button on the bottom of the post and share with your colleagues. Your input is encouraged, so if you have comments or are aware of more efficient tools not included in a post, I would love to hear from you. Enjoy your time browsing through the Toolbox.

Thursday, December 12, 2013

Generate Coverage Plot in R from Depth Data

Here is a simple way to take coverage data (coverage.depth) and make a plot in R to visualize it.  All you need is a column with base pair coordinates (V1) and a column with respective depth (V2) and you are all set to plug it in the below R code.


  1. Thanks so much! I just tried this out and the plot looks great.