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Thursday, May 9, 2013

Thousand Genomes Complete Genomics Information

Recently I have been using the Complete Genomics high coverage sequencing data from the 1000 Genomes project.  Its a bit difficult to find information on the populations, samples, and available sequencing data since they are all stored in different places on their ftp server.  I decided to make a post that tried to combine all the useful information into one spot.  Here are links to files that may be of interest.

population file: gives a key of abbreviations used for the 1000 Genomes populations

pedigree file: provides relationship information on 1000 Genomes individuals that are related as well as gender and 1000 Genomes population

sample file: detailed spreadsheet that offers information on sample id, accession number, population, family, gender, relationship, sequencing center, and coverage for each 1000G sample.

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